Scaffold Ga0070706_100000002

Overview

Basic Information

• Taxon OID: 3300005467
• Scaffold ID: Ga0070706_100000002
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 326510
• Total Scaffold Genes: 275
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 149 (54.18%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001333	Metagenome / Metatranscriptome	720	Y
F002675	Metagenome	538	Y
F064465	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070706_100000002177	F001333	AGTAG	MINDPFHPEEAVARERESSKRKLFAVVCAVAVTALLLVGYGYIRKYHAQRVLAETPVLPATDSGPKGPPLAHVVVDEPTLSKGVTTISGAVKNVSRQDLNNISIVIELRRRKDGGLEESVLPVTPAQLQPDQEGVYSMQAPAQDFASIRLAGVKADPQSTLIAYSSSQGKKRPPERLEPKTIIVKRAGKPGEFINTPDNPARVP*
Ga0070706_100000002257	F064465	N/A	MIARIAKYFSPPRALNDYATHIPILIGLAGVREIRSVLEFGCGRYSTLTFLNRSAFPRLERLESVENDAAWAEVTNDPRWTLKLIDGEISDSVSGLDLEQFDLILIDDSKTSAQRAATIRAVARQEPQHPWVVIHDYEIDEYRNAATAFKHRYPFKSYNPQTGVVSNSPVNVAKLLDRQIKQNSTLEPDDITGWLCAHPINPENLVDPF*
Ga0070706_100000002270	F002675	N/A	MRPVLLTVLLTLAVVLAHSQEPAARQTGVLRLRVRVKADDASSLRGLARKRFFLIPSSLEQNRSLIEAIERQPVATRDCYYQKLGASAALINWLRNGDCESVYCRGVEKEFVTGPKAVPEFASAFAASQREYGSDETARQWLTTNLIPNVRDGFYRNRQSVLEALLKQAGSTVYSVMTDRNGTAYFTELGPGTYVLSNLIPTELGQTLVTWNCEVQVKAGDLATEKPYLVSNRKERNVKCVGVEKPMPVCAAN*