Scaffold Ga0070685_10096838

Overview

Basic Information

• Taxon OID: 3300005466
• Scaffold ID: Ga0070685_10096838
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1796
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016614	Metagenome	246	Y
F020251	Metagenome	225	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070685_100968381	F016614	GGAGG	MLILLAIVAAGAVMLAALWVFRGREISSFIDRYWTVETQSSPIQSIAYEGSGTGGILICNGISFDLNDLGPGLSLSIGSTKDNQLALATSGKVF
Ga0070685_100968382	F020251	GAGG	MRKRICYIHVGPHKSGTTSIQWFLQENRAELLKHGYFVPESETKRGAHHALAEGLAGLDVGEHRQPLVTKSIQAITETASEAIIISSEALEGILDSRKRAEIFFEQIRELNLEPNLVLFPRNQPQWINSSYAFSVMSFRRADAFQVAALGFARSPGSRFSRWVELADVYGLELIARPFTKETIACGVITEFVRAIGINSSQFRDSEIRRNEAVGPFTVSVAREVLRAIAPSGKTLKWLQAQQCKKQLAVYLKDTGLADVRYCGLSTSLARQMEQELQSDNDAFAQSVWGKPWADIFAADVTEEFTPNDFEVCPPNWFTARRLRRAIRAMKTRADEILHDPGLAVDSPWNDLAHRSGLISKE*