NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068474_119459

Scaffold Ga0068474_119459


Overview

Basic Information
Taxon OID3300005465 Open in IMG/M
Scaffold IDGa0068474_119459 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_0025m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1528
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014748Metagenome / Metatranscriptome260N
F078836Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0068474_1194591F078836AGGTGGVNTYEIRASRITYDFYEIKANSLEEAEQRALCRTDKVNTLTTVSTVDYCKEVN*
Ga0068474_1194593F014748N/AMEIGDRVQTLNTFVPITGEIVDMYLNLVTIADDDAETVDQLLSFHADDFEVIS*

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