Scaffold Ga0068484_102398

Overview

Basic Information

• Taxon OID: 3300005464
• Scaffold ID: Ga0068484_102398
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT233_1_0025m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2605
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001479	Metagenome / Metatranscriptome	687	Y
F014025	Metagenome / Metatranscriptome	266	Y
F020546	Metagenome / Metatranscriptome	223	Y
F058219	Metagenome / Metatranscriptome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068484_1023981	F014025	GGA	MNKLDNYELSTLHYTLCHYIGSQKTQLDEDEIEWLHTLREKVDNIMQLQAKYDMECG*
Ga0068484_1023984	F058219	AGGAG	MSKSKKQFKKDLKYLKKHLDDKKEINQVIEHTKKIGISSEYFCEEFVFIPDGETPEECARFHDVEYLDITEFNYHHWIGNKMEDY*
Ga0068484_1023985	F020546	GGAGG	MTTKTDPNQNYTIKEFYIKVKGDYGKEKIVRVNDSGDKLLTLITDLGWDYQRMSMSGRQVFDEIHQLLGTIPEGEVYMEI*
Ga0068484_1023987	F001479	AGGAG	MSKEMLFLCDVYDAWLIKNKLPHRCASEILYGADTMNKLTANQSYWLESFISTWDVIADNT*