Scaffold Ga0068485_11805

Overview

Basic Information

• Taxon OID: 3300005463
• Scaffold ID: Ga0068485_11805
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT233_1_0125m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1185
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 125

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016883	Metagenome	244	N
F055781	Metagenome / Metatranscriptome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068485_118052	F016883	AGG	MTFSKAWLEKKIMCGLCNFGCCNHQNFHVEITEEEQEKYRKEFGLDLELEWPQDGCCDLLHEDGSGCSLGNDRPVFCKMYPLVENKSGRVVINNWAYLHCPKPDNYELDKVVDGKYHYKLKKKHKNKRDKLILDDKIENVVKQIWIQSKEALIKTYGQEFYEKIKNEMKQTIKHEFF*
Ga0068485_118053	F055781	N/A	AGSGLSMLGVALGCKLYNKNVKTIHPVALSSYVYKNKKMWYDRLSPNDKFDGDFKVVQSEYPYQHKLKLDESLPLDQTYEAKAWDWMVKNLEPSEKVLFWDVGIKEYDLDYIEPIKWHKSEYEMIIDREVRRKSKVTKHDFF*