Scaffold Ga0068867_100916578

Overview

Basic Information

• Taxon OID: 3300005459
• Scaffold ID: Ga0068867_100916578
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 789
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000130	Metagenome	1990	Y
F001365	Metagenome	713	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068867_1009165781	F000130	GGA	MELLGDVGHVESYSLYLEMVFVLVQERCMVFAKPTRGSDILLDAPDGTPR*
Ga0068867_1009165782	F000130	GGA	MELLGDVGHVESCSVRLLMVLVFLQDSCKVCAKRIIGSDIV*
Ga0068867_1009165783	F001365	AGGA	MVLQGDEAQLEARFGPFGDSANLDVRSVHGLRRTYHRLGNHFGRTQWNS*
Ga0068867_1009165784	F000130	GGA	MELLGDVGHVESRLVRLEMVLVLVQDRCTVCAKRTIGLDIV*
Ga0068867_1009165785	F001365	AGGA	MVLLGDEAQLEARFGLFGDCANLDARSVHGLRGTYHRLENRFGRTRWNS*