Scaffold Ga0068867_100033288

Overview

Basic Information

• Taxon OID: 3300005459
• Scaffold ID: Ga0068867_100033288
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3731
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001223	Metagenome	743	Y
F079186	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068867_1000332882	F001223	AGGAG	MKRFVTLKTLILVFSLLLAIIPVGATERPYAATGNGLATFITDDAGNVVGATVVVSGNATHLGLFSGNGKIQFIPDANDPNISHPAGYVTYIAANGDRLPSVIENGSMDLRTGIATGDMVFQSGTGRFEGASGRAAIVVEQNFITGAYTFTLVGNVNY*
Ga0068867_1000332883	F079186	GGAGG	MRCLRPASSSLPLFACVLLMLSLHPDASAKSSSDLIRIWIVGSPYTGALPPEVVPRELSQRAESLGYKIEVESFRAVGFAARFRQALYDHHEPEILTFGNFAVISGANTPAGWIEGVDSDRRAASSLALVHESMTSLQSWGWVMLVRSAVNYDAARALAMREPQCEGGFAAMDPTLRDAEEKALLATRAYIDCDRSTLTSISDESRLVQQCFLPQSDSKMESVKTCRVFGNHKLAFISLVTSFSAEAREPNAIFQLRQGMDLGQQSILAVLRNQSGTWRVLAITHDPVNTVGRNSRTSFNAFVNKLDQEQLPGVTPELAQLLTPDGIYPLPPRGERFGDFAWAPSQSTDVIGQVVEFVWAKDTNWGLTRLFFLPANENKLSSGYLMSGGASVWRVWSINKAGDVAFSEQHSFTH*