Scaffold Ga0070681_11285576

Overview

Basic Information

• Taxon OID: 3300005458
• Scaffold ID: Ga0070681_11285576
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 654
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014924	Metagenome	259	Y
F085833	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070681_112855761	F085833	GGA	VSSYLLLAIAIFLVAFEFQNLLSWGGARTIKPGPEKSQDFTIIVPVFGHPRYFDGERLRRYRHRVLVAMEISAPL
Ga0070681_112855762	F014924	AGGAGG	MQSAATRGFTVVTVVTMIFAPVWKGNHWVSVLTGKKTETTVVKCQPNDPCPAQKHVTQKLVLPDP*