NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070681_10563884

Scaffold Ga0070681_10563884


Overview

Basic Information
Taxon OID3300005458 Open in IMG/M
Scaffold IDGa0070681_10563884 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1052
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032187Metagenome / Metatranscriptome180Y
F073390Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0070681_105638842F032187N/ALISDLFTFCNKAVLSPPLEPTEPSADPHAKGDDEIRKMAEAIMDKVVDQLLNEAAEIVLRED*
Ga0070681_105638843F073390N/AFSGARGIATILERKGRDHVKFLAQSEAALSSEDVKDPSAEASLVGGNFFTDIWDNGGREMAKEIIRKSEKGIHDARKVAEAAEKSADPEGQLGID*

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