Scaffold Ga0070681_10463593

Overview

Basic Information

• Taxon OID: 3300005458
• Scaffold ID: Ga0070681_10463593
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1179
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011612	Metagenome / Metatranscriptome	289	Y
F014913	Metagenome	259	Y
F037951	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070681_104635931	F037951	N/A	LCTEFEMQVRQLHLMPETYTSSAELRTWCERNRNNFYIPEWLLDEWEIRVNADLTGAA*
Ga0070681_104635932	F014913	GGAGG	MGVGEALCTKREVVAVVDRPQDIEDEEAMSFFGGSEGDADESQG*
Ga0070681_104635933	F011612	N/A	MPGLPTQVPWRRFVCVLRKLGYTAQKTKQGAKRSFMNPNRMPKVISLHEPHTGKNLGATMLRKYLQRLLLNEDEFMRLLEDC*