Scaffold Ga0068706

Basic Information
Taxon OID	3300005452 Open in IMG/M
Scaffold ID	Ga0068706_1010005 Open in IMG/M
Source Dataset Name	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-B MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005452 Open in IMG/M

Scaffold ID

Ga0068706_1010005 Open in IMG/M

Source Dataset Name

Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-B MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2507
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

2507

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location Name	USA: Wyoming: Yellowstone National Park
Coordinates	Lat. (^o)	44.963	Long. (^o)	-110.715	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming: Yellowstone National Park

Coordinates

Lat. (^o)

44.963

Long. (^o)

-110.715

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011548	Metagenome / Metatranscriptome	289	Y
F020180	Metagenome / Metatranscriptome	225	Y
F026891	Metagenome / Metatranscriptome	196	Y
F069555	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068706_10100052	F011548	GGAGG	MVVISGVELVQSDSLLWAAQRGSERLRLIADGGVQVRRVGERVYVAHALPMPATRTVWLMPTTKYDALYHLRIDDQHRFGVIPEDAQVWSDSIGGIYCERGYSAAQMSIIRPPAYVSVVRKRVLVSELRYIALLPRGELREMGTKRDVLLLAKTGEPLALQLARLLWDDDDFG*
Ga0068706_10100053	F020180	GGAGG	MYDAKRWYIARCSCAKPILYQDLDRYPLRCARCGGHVYTEPRPPHFERLAPTPIVDFRAVLRVLGWCVLGLLGYIALCIYFVVLGGS*
Ga0068706_10100054	F026891	GGAGG	MTIIAGNVVQIDAEDGRLWFAQNGAKRTRLALYAAQGVYIERVDVDIPVYVARNAVPVWTGEQWHREAAIYLYPAEKDELYAVWLNTHCGFGVTPKDAVLWDASSFGGSKNSESKIAVLKPPCYIEEFTYKFSTPSDWFSVTLDGAVRRLGTKSNIIALALHGDKDAEHLAQIKGWLGELIAGQLEVQDV*
Ga0068706_10100055	F069555	AGGAGG	MRKAIKDQAVKLAAAIRESGKREIEYRIGSFGLELADGSRPPADMLQRIQQLSIKSETVCQWGEASDARRDYKLVRSAPDGAYYLAEYRWLDNNGLRYDVVYCQAPKHLEPRIRSLQKAMAQESQASANGSDSGGGGCSPCAPAASFEEASDA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0068706_1010005

Overview

Ecosystem & Geography

Associated Families

Sequences