Scaffold Ga0068706

Basic Information
Taxon OID	3300005452 Open in IMG/M
Scaffold ID	Ga0068706_1004116 Open in IMG/M
Source Dataset Name	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-B MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005452 Open in IMG/M

Scaffold ID

Ga0068706_1004116 Open in IMG/M

Source Dataset Name

Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-B MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4731
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

4731

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location Name	USA: Wyoming: Yellowstone National Park
Coordinates	Lat. (^o)	44.963	Long. (^o)	-110.715	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming: Yellowstone National Park

Coordinates

Lat. (^o)

44.963

Long. (^o)

-110.715

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F042114	Metagenome / Metatranscriptome	158	Y
F043791	Metagenome / Metatranscriptome	155	N
F049435	Metagenome / Metatranscriptome	146	Y
F052993	Metagenome / Metatranscriptome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068706_10041162	F049435	N/A	MFLCFIDLLPASKAQSEIVFYVRTGPFILPKLPLRIYLGFISDKSGPADVKNIKDLMLAKKGRIMNEEDQKLLTDPILIYDIYAVNTLEGVQLDGFFDLSFNVGRLSELQDCFNKISNDLEIIRRSLSKYAQPNPDAISIVTPMPSPNQIYQSLEQSLKPVIDSGAFKLSATIADYICDFVLHMFHKNITAIVYEIWDVNKLVVRSCDNRYFDVYNTWDDIGEEEGWEFPAFDDEH*
Ga0068706_10041164	F052993	N/A	MISLQQFKAKAFQRVVKKFKLRCYAFSYRDSQWLVAIRGNVVILSPALISISPDINDIRRLGNEKDYELFLALTGLGVKQSLRYQLVATGNFMTLYPRYNHAIFARSNQHVYSTRWRRIALAHAQYLSCRISQPPCMQIAEDIERGKLMIALNYVRLGSFYIFVNGIPIDYAYPFHEQCSPQVYVGERKMLMKDNVVPWLGRLERTQLLPLPTPPPTLEQVLDKSAGFDYNDDHEQEAAYPGTD*
Ga0068706_10041165	F043791	AGGAG	MIENVLIAGLATVYFSFVFTAKRGPFDFFVRIRAAARRIPVLGYHLSCPTCLSLSSGALLFALTFTPLAFLVHILAVAGIVLALHGMAGYWHSKDDD*
Ga0068706_10041166	F042114	N/A	MDEITRVKTLNEAFNAVQRRVPFLYQHSSWHALYQPLDSQYARLIIANLHRYPQPNEYADAMSEMAIFASHVQPKRFEYNGLKCLQFDLKRVKLQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0068706_1004116

Overview

Ecosystem & Geography

Associated Families

Sequences