Scaffold Ga0066681

Basic Information
Taxon OID	3300005451 Open in IMG/M
Scaffold ID	Ga0066681_10006211 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005451 Open in IMG/M

Scaffold ID

Ga0066681_10006211 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5570
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

5570

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005560	Metagenome / Metatranscriptome	396	N
F009677	Metagenome / Metatranscriptome	314	N
F054748	Metagenome / Metatranscriptome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066681_100062114	F054748	GGA	MTTDETSRIDEPSKRLTEMILKGEDQESARIAAEIVGGRSETNDIVDAISETMNIVADLHEVERYTVQQVESCERAAESALNAIRPGIKVEQRRISGKVMVTSLHGDPHRFDKTLLLTMLEMGGFSALDGGEELSPEEVVRNVKSLKPDVLAIPLVTTSAVNDLLRTRSLLANSGVKTKLVTYGRGVAKLPSDSQLSAMEEDSLSILSRIAEILMSR*
Ga0066681_100062115	F005560	GAG	MPAILFAAIAVAIELLYFNYMVSRGMMDEAFNIPIGAAKIPLSIALFFSLANAIVLLTLWMTVFENTAFVMAGPDRRVRRILYPLRMVKAAAIVLTPFSIVLFTPYIVESSWFISAVGSASNSVPSLRQTAINFYTWSFGVARMDYSVKFVVSQLSAALSSTVVSGLLLWRVKGTRNLMLALRRKK*
Ga0066681_100062116	F009677	GAG	VIGWLNKRRWILVALALVILCSITSSGHSAAPSPQENVNLYTGNKLIISSTQQAIKSVIVRGNLTAATVSNGTYPAKNFTLTTNSTQLYTLNLWLSYPSTYTTAIIINDPSAGANSQYTSYYISAGDLNLTIFAAFQPAPNNGEGVPLSWSSFFGWFSQFGSAFPLWIKVLYTILGAQFAFVGYRWIKFEDEKRRVEGHLPLLDRGNRIYMWIDVVFRTLLAGFIISLALMLGETVIITVAQYLFFVTLNLFPLVDVFSLFFVAVLGLIIYLAREGLDKFLDLKPMMED*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0066681_10006211

Overview

Ecosystem & Geography

Associated Families

Sequences