Basic Information | |
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Taxon OID | 3300005451 Open in IMG/M |
Scaffold ID | Ga0066681_10000649 Open in IMG/M |
Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 12156 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (76.92%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California: Angelo Coastal Reserve | |||||||
Coordinates | Lat. (o) | 39.7392 | Long. (o) | -123.6308 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F005917 | Metagenome / Metatranscriptome | 386 | Y |
F006948 | Metagenome / Metatranscriptome | 361 | Y |
F077702 | Metagenome | 117 | N |
Protein ID | Family | RBS | Sequence |
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Ga0066681_100006491 | F005917 | GGAG | MLVRPHLPGYRWFHIFRNATIRTGVYVGVCLTLVFSAWLVIANRAPFLERFALERNIVAAAILGFLAAVPIFRFLRLPGHLLASSLIGWLIFSLSYRVLCLFFRDLSNWHSAPQVFMQGAVVYMILTTLSWIATTIWRARESHASHPKHHAS* |
Ga0066681_1000064912 | F077702 | AGG | MDTQIKGFADSMYEQSFVESAVSTRADTTNLLKERTTKRTAKTPVKESQINGIVKFQVQHIERCLAARLESYERAYEETGKVPTEEELEEILAELKTVGDLQVKHSSSFIDNFLRARRAQVQCDPEQSLMEGCAEAHDRVLRTWKNWGEKIRIKEVAPAKIKAAAKPPAQTVAETQPIPDEAVPMEKQRSNRTLFAYYWCFFKRLGNECNRTWRGELAAALLTATGAYLLIHRVSAVAWTSFKSEGLSMVIAVWSIALWHVLRTPWLLHKEASSTSGGIRRVHWGHGLFGIVVLAGVLAGSGLYARKQLAKPIAPVMAAPYVEPKNSLRKRTLSLANDLNVFLGERWSKRPPGHGPDTLKYDQATLDLYMKFYRSPMVGILQELQDKGLDTGLLGAPGGAPSRFLLPDEIRQLRDLAYHLDEKGNVVKF* |
Ga0066681_100006499 | F006948 | GGAGG | VRLRFLHFTSLILGASLVFVSGASAQRPDTLMPEQSIAKGKQILSELINALGGPGYLEVRESQCEGRRVLFGHNGEPVGNIGFVDYRRYPDQDRTEYIGKGRHTILPYLIGIDGLDWSHGGIVITLYNRDHGWTFDRSGVNELPATSVSDFQEQVKRNVDNLLRLRLKEPGTSIRFGGNDTVDLKQVDWVEITDAQERVFRLAVDRSTHLLVRSSVTTKDEETQQINEDVTIYSNFHLKDSVWTPLQVSREHNGRRAVQIFYETCKYNPGFPDQLFDQSSLSKQGGQSLAKKGKN* |
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