NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066682_10330403

Scaffold Ga0066682_10330403


Overview

Basic Information
Taxon OID3300005450 Open in IMG/M
Scaffold IDGa0066682_10330403 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)983
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018637Metagenome / Metatranscriptome234Y
F036440Metagenome / Metatranscriptome170Y

Sequences

Protein IDFamilyRBSSequence
Ga0066682_103304032F036440AGGAGMIDAFQTSGTSPTSEGGPDFRCENHGSLFLLFPLTPSAHSWIEEHLPEDAQWFGNAVVIEHRYIWTILDGIQAAGLAVTRG*
Ga0066682_103304033F018637GGCGGVVKKIAAERIRARLEKRLANFLGCEVGDLPRLKLGTLVHTLFLVLGDSEELGGFHTSMDAVLQLVGREIVWDVELKVEETETPKVVVN*

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