NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066682_10243313

Scaffold Ga0066682_10243313


Overview

Basic Information
Taxon OID3300005450 Open in IMG/M
Scaffold IDGa0066682_10243313 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1157
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005700Metagenome / Metatranscriptome392N
F007915Metagenome / Metatranscriptome342Y

Sequences

Protein IDFamilyRBSSequence
Ga0066682_102433131F007915GAGMSLAEAAKPAPPSSTIRSYAMIGIVLYAFGLVLNEIGNGLTQLWLVPYADTISALGFVIALYTAALAGLGTRLTVLIGLIYGIGIFYVCEPDATYVASGLKISSYNTTHFVGLGLIGFTMILLIALAF
Ga0066682_102433132F005700N/ALLIWSLLVDRLAFLALRIICRLRESSGHQYYFERQVGKPGVSRRILRDIRVLVFVFFLSALIVPQVTQVNPQNPQNLVIVSNAFIYVAIFLLAIPSSIHVLLWVLEDSGLRCHNTSRLTVTVPAAWTSRWLSSLGGIGAFVSFAVAMGGNLDRAISLGFTLMISLLPSCVLAPTLFYRRLEPGIIAKIRSSKAAMTMARLFPQVSNPSLPPLSAPTLRSVRVNEETKQTTEPHS*

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