Scaffold Ga0066689_10067878

Overview

Basic Information

• Taxon OID: 3300005447
• Scaffold ID: Ga0066689_10067878
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1967
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005560	Metagenome / Metatranscriptome	396	N
F038167	Metagenome	166	N
F054748	Metagenome / Metatranscriptome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066689_100678781	F038167	GAG	VIGWLNKERWILVALALVLTASILNPGYAAAPSPQENVSLYAGNRLIISSTQQAIRSVVVRGNLSAAIVSNVNYPAKNFTITTNSTQLYTLNIWLSYPSTYTTAITINDPVSRSNSLYT
Ga0066689_100678782	F005560	N/A	VLAVASGTTTYKRMFLRWEILRGWMPAIVFAAIAVAIEVLYFNYMVSRGMMDEAFTISLGALKIPLSIALFFSLANAIVLLTLWMSVFENTAFVMAGPDRRVRRILYPLRMVKAAAIVLTPFTIVLFTPYIVESSWFISAVTSASNSIPSLKETAVNFYTWSFGLARMDYSVKFVVSQLSAAFSSTAVSGLLLWRVKGTKNLMLALRRKK*
Ga0066689_100678783	F054748	GGA	MTTDETPRIDEPSKRLTEMILKGEDQESARIASEIVGGRSKTNDIVDAISETMNIVADLHEVERYTVQQVESCERAAESALNAIRPGLKVEQRRISGKVMVTSLHGDPHRFDKTLLLTMLEMGGFSALDGGEELSPEEVVRNVKNLKPDVLAIPLVTTSAVNDLLRTRSLLANSGVKTKLVTYGRGVAKLPSDSQLSAMEEDSLSILSRIAEILISR*