Scaffold Ga0070708_100024137

Overview

Basic Information

• Taxon OID: 3300005445
• Scaffold ID: Ga0070708_100024137
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5179
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004003	Metagenome	457	Y
F004186	Metagenome	449	Y
F004349	Metagenome / Metatranscriptome	442	Y
F006952	Metagenome	361	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070708_1000241372	F004186	AGGTGG	VHPRRALLVIAVAVLTVGCGVPTPAPPPSAKEVLAKPQQSNLTDAHFAVTGKITNNGVTVQLVGDGALVYKPKPAGRFKFTTTVAGQTLTIEEISLDGTNYGLTPASSMWVSTKSASGIDPNAFSGASDQKYVGEETLSQGKAWHASAKDKDGNAFDAYIRESDGYPIKYVETQTGGQNITLTFDHYNTGETIKPPPADQIQPG*
Ga0070708_1000241373	F004003	GGA	MTKLLRAVLAVVAACLLSACGGPGTPLGPPSPQDVLSKPVHAGNLKDAHFLVTGKFATNGATVGVTGDGALLYKSPTAGRFKFQTTVAGQQVSFEDISINGTDYTLTIPGNSKWVAKASTSGLGPSSFTGTSAFKYVGEERLAGGKAWHASAKDNDGNPFDGWIRESDGYPLKYVITQQGNSLTLTFDKYNTGVTIAPPPASQVVKG*
Ga0070708_1000241374	F004349	AGGA	VKAKPRATLAIAVLMLTGCMANQAAKTPTAPEILNKPDQANVKDAHFTLVAHIVSAGVTFDATGDGAIVVKPAQASKFTMTATIGGQSLKFEEIIIDGKEYDLAPDNPRWTVKASTSSNPSSFKGTDAVYLGEDTLKLGKAWHVKAKDASGSPFEAWVRESDGYPLKYASTTQGSTFTATFDQFNTGQRVTAPPASDVQS*
Ga0070708_1000241375	F006952	AGGAG	VIGPLGTANHEIREAERIDQERRRALLTEPRRLTDQLLGQLEELNLDGVRIVPGSYDPGLAEIRSQLVGWPGIGAPLLQRLQSGTRTAELIETVFTIQEAIAPPTLPAGAVIFEEPDLV*