Scaffold Ga0070708_100006494

Overview

Basic Information

• Taxon OID: 3300005445
• Scaffold ID: Ga0070708_100006494
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9306
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (18.18%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002993	Metagenome / Metatranscriptome	514	N
F006078	Metagenome	382	Y
F014244	Metagenome / Metatranscriptome	264	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070708_10000649410	F002993	N/A	MAYGLAEGFRKTAVRLGGRKKSRAVVIATFGNHFTLNDALEKFRKEGLTFETEKGHIVKIFLDKNTKERAEQIRSIIRENFGYVEPL*
Ga0070708_1000064944	F006078	GAGG	MQALTTAGLGAVTRLEPKVKVASQSVFYALRTRDGTCASGRGVSQTRVAEIVFGVEIVEWDLCSACLSRTGFLEYFDSLPSATLREAEEIKILLGISNETFERQHRAAPPIT*
Ga0070708_1000064945	F014244	N/A	MVAFGEQTYTLLSEEARARGITIQELLRAVVIPDWFKAKYEPVPRQNPIIERRTREEEPVVPYSFSNKLRY*