Scaffold Ga0070708_100005370

Overview

Basic Information

• Taxon OID: 3300005445
• Scaffold ID: Ga0070708_100005370
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10168
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004831	Metagenome / Metatranscriptome	422	Y
F005427	Metagenome	401	Y
F020240	Metagenome / Metatranscriptome	225	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070708_1000053701	F005427	N/A	GKKAKKGMVANLSANWIHDAISAIAVLGGAVAFGFWRDSISAGLFACFALFLMAGIYKALQQIVATFRWEPDGTIAANVNWNTFSAAERSEPNFEISAKAIEHLLPWVKDETSLTEESAKAYCSVLLGTLATLHPKLAE*
Ga0070708_1000053705	F004831	AGGAGG	MSAARLLALATLFLATTFVQAEWKEFTFPSGNFRVVFPESPQRLRGARRNLHQFSAAAGAESYGVAYADYSPGTDWKSAVDGKRDSIVSGLGASVVDEKCTSVEGYPGKWIRFVGPNTSGELAIYLVGHRLYLLHAFAPKSIQRPQNFSKFLNSFRLLSGSKPQRGRG*
Ga0070708_1000053709	F020240	GGAGG	MPDPTWQALYRAALVESDPIKLNGRIEAARRSIRQRLEQVEDSDTRERQQLHDALGALFTLVARKRSA*