Scaffold Ga0070708_100000450

Overview

Basic Information

• Taxon OID: 3300005445
• Scaffold ID: Ga0070708_100000450
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30851
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011878	Metagenome / Metatranscriptome	286	Y
F021735	Metagenome	217	Y
F036744	Metagenome	169	Y
F066007	Metagenome	127	N
F082459	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070708_1000004501	F036744	GGAG	MEPLPQLESCLRLAFDARDGEHPSGVSLASWFVRAPTRGRRRSDLDPDLLFPKELRPRLGPDAGRTISLAMEPSSWRTCAAPRPTIPLATREWLAETALALGKTEGFALTWALLRAVAELESLAQRLLGSRTSRATVRQVLHGVGQRTLRVEPF
Ga0070708_10000045014	F066007	GGAGG	MSMRLFFVLVALGGSVYLFVHDRTDRYVMGALVASSLGLLLQMNVIALRMQYARSVVWAAIAVCAGLIWSRQASKNGATVAAAMAFVSTLTVALSLRILR*
Ga0070708_10000045017	F011878	AGGAGG	LTHRVIMSEDVVESTPVYVRQEARLRFEEIAEGLEGIPRESAFWASVRVSRLCLVVRGWSFFYTLDGETLRVMEIRGK*
Ga0070708_1000004503	F082459	GGA	VRAILVVAALALTPGAGAAAVSTPCAAYSGPQRPDDPGLREWLRALVHEVAVEEGVDPHALEALGMTETALQPMLGRSCEVGPFQVMPWWAAIFRLHSPELLWDPRINAIAAARIYKDAWRRWDERFAHAGKNRTLRAAGWRGNLDRFTFAALAYNWGRAPQAFAQATDLRTVPIPASAAAYAVRFSQALRQARERARADNDILQGRWR*
Ga0070708_1000004507	F021735	GAG	MLALLHEQKRSEPDERGAPAVSLPLRVQPSRASALGWSHEVFALTLLIGNASFRQEDGALLPRGDGPVVAVCAEYERPLTSLGPPTLAPYSLVRARLQGMPTLRLPGGWFRAPLRLEVTRRAARTAARRDEALARAGRFLEELNEAWQRRLGAVLEVAWPVYPPEHAGPLLDAVAGAPLPELPLR*