Scaffold Ga0070700_100000005

Overview

Basic Information

• Taxon OID: 3300005441
• Scaffold ID: Ga0070700_100000005
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 233160
• Total Scaffold Genes: 170
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 127 (74.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009174	Metagenome / Metatranscriptome	322	Y
F012067	Metagenome	284	Y
F094376	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070700_10000000520	F012067	AGGAG	MKRKLAFIFAVPVLFFVVGFQGSCHSQCEELRQELIKDCRNDLGANNDLCREDQKRFQEACHDDSLGEN*
Ga0070700_10000000561	F094376	GGA	VIYIQPAETKMKLIISLLILLLAAAPLILAAEDVRPDGWAGMVLNVSSAEDAVRLFGPPGKDKDKVALDLPRPLSWLSDKWKQKIFRTITYKKLREYKEVRFSFLDGKLIAISMEAPNGEIDDNWIDPDDLEKLFGTPFKPQQRTTKKLVPAAEFLTSAPDELKKDEYDYWYDMIAISDKSFIVAVADNYIYISGLFESRDAKRRKKINARGAKYPGFVSQIEIISRTLAAS*
Ga0070700_10000000587	F009174	N/A	MKANTTKNLASVVTLAILSPFLALAILASTQTAGIRNNDVLLLLLTLLSAVLSGINGFGRRTATAVQLSPAKTKSRGADPSTVSVLFAGSSSK*