Basic Information | |
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Taxon OID | 3300005440 Open in IMG/M |
Scaffold ID | Ga0070705_100192791 Open in IMG/M |
Source Dataset Name | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1390 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan: Kellogg Biological Station | |||||||
Coordinates | Lat. (o) | 42.3948 | Long. (o) | -85.3738 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F036461 | Metagenome / Metatranscriptome | 170 | Y |
F078687 | Metagenome / Metatranscriptome | 116 | N |
F099903 | Metagenome / Metatranscriptome | 103 | N |
Protein ID | Family | RBS | Sequence |
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Ga0070705_1001927911 | F099903 | GAGG | MRDPAYSPSFPAATAAFEVPCVIHALELLRELRTDWVGWIENGLDGTFVVVLAPETIGELNQLMSRVGTWITTQDFLAIRFHLDGRAHIMQRGGFVAPADRSHASDI* |
Ga0070705_1001927912 | F078687 | N/A | MMPPLDEFARRRLGRALVSLEGAIARFEAHGNGDVEPNVNRLKRLADDIRAVLGMAHDNAPRA* |
Ga0070705_1001927913 | F036461 | N/A | MIGGNSLNEIVLFEVPARSGATQLLAELSTSRLAWMERGDDVSVIGVLLNPDEDDLARLLREVEAWVGTRGLLALRFEVDGRTYVLHNPVLAERAHTAA* |
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