Scaffold Ga0070705_100057208

Overview

Basic Information

• Taxon OID: 3300005440
• Scaffold ID: Ga0070705_100057208
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2300
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038168	Metagenome	166	Y
F075926	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070705_1000572083	F038168	GGCGG	MPNRQKLTEPEIHAIIVSDAKIRLGCKDFEPDFTLHRTDVDPTRYPSANWDVQSASNADGWAPDCAQAFKEAVAQARRKFDIAWPLWD*
Ga0070705_1000572085	F075926	AGGAGG	MADKVPCPICGAASDGGYNIGDSTVFKCPQCGGYRLAGTVITLFENSRLKKPDPKAFLDLVRRKRGNSREYPVIIPADLGG*