Scaffold Ga0070711_100000044

Overview

Basic Information

• Taxon OID: 3300005439
• Scaffold ID: Ga0070711_100000044
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 83348
• Total Scaffold Genes: 78
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 54 (69.23%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.4774
  • Long. (^o): -85.451

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001330	Metagenome / Metatranscriptome	721	Y
F004365	Metagenome / Metatranscriptome	441	Y
F018437	Metagenome	235	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070711_10000004449	F001330	N/A	MIPSAGVLLAIALSFSTAQTGPLEGTWELTRIFRSGRAAATSAVPVDSTVYLRITLETHPGDWISGRLYRRYHGEPERSKVEGGPLGHTGRWIIGVELDRPASTKARTAAWLVGGGGGDTLRFGTSLVPDADSLELRRIAADAPYPTTVTEVVTVP*
Ga0070711_1000000445	F004365	AGG	MSPAARARMLRLETALVFVLLAAPACFVFNRGNKSVDQSVANNVPESEIALNVTNHNYLDVVVYVLHDGQRTRVGTASGSSSSLFFLPPRLIGQGREIRLYGDAIGNDDYAVTDILVVQRGQYIEWTLETDLRRSSVGVF*
Ga0070711_10000004451	F018437	GGGGG	MIAAMRSRVARAALAVVAALACNDGLRPTTCSGICGTVTFNGTAPESTQAVYVVAYHTFPHSQDSLFKFQPSLAALRALPLTGIPTFYDAAVPPGRYEWVLAVWVKQGFNLTNADSTLREAGYYRDPADTSQPGVVTVAGATQPADSINFVVDFGHMHPPCHYYSPPCP*