Scaffold Ga0070710_10199584

Overview

Basic Information

• Taxon OID: 3300005437
• Scaffold ID: Ga0070710_10199584
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1262
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.4774
  • Long. (^o): -85.451

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002788	Metagenome / Metatranscriptome	530	Y
F004510	Metagenome / Metatranscriptome	435	Y
F034301	Metagenome / Metatranscriptome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070710_101995841	F004510	GGAGG	MITCALIALAVIALVVVVLVQGKWTRVDSWFAAVFASAVMAMVI
Ga0070710_101995843	F002788	GGAGG	MAFLLLVTWLGYVQPPSHYQVEFSSNEACEAARLQLIKDAERIRQSMIERATEQGRQIGGNNKTALLMAAISNAPYVSAVCVQKSAS*
Ga0070710_101995845	F034301	N/A	MNEYDEYEVIDADTKRRLGRFNDLKSARSMAQTWANASGGKHQSIEIWGVVVTKTREQVETVTRTATEQRHQGEDYSEKEDRD*