Scaffold Ga0070713_100000005

Overview

Basic Information

• Taxon OID: 3300005436
• Scaffold ID: Ga0070713_100000005
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 201526
• Total Scaffold Genes: 224
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 158 (70.54%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.4774
  • Long. (^o): -85.451

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016854	Metagenome / Metatranscriptome	244	Y
F031439	Metagenome / Metatranscriptome	182	Y
F064160	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070713_100000005194	F016854	AGG	MAAPNVKSLPKPGEVWLSCPPYLMLARIVEVDTECEPPVVSYELHDDDGSLLTAVEHAQLDRGWWRAFQPLKRHFG*
Ga0070713_100000005222	F031439	AGG	MYLIPIAVIILLALIAVAWSPLFALIFFAIGFVSFLAYAAMRPRADEKLAPPEQPGRQPHHEGGEPTGIWGERRSS*
Ga0070713_10000000544	F064160	N/A	VKLLLIPLAIVAFVIFLLILGAIGLAVAFAVLYVLGKFWRLISRAGRPRRRRASA*