Scaffold Ga0070714_100515714

Overview

Basic Information

• Taxon OID: 3300005435
• Scaffold ID: Ga0070714_100515714
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1141
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_57_17 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.4774
  • Long. (^o): -85.451

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005638	Metagenome / Metatranscriptome	394	Y
F018221	Metagenome / Metatranscriptome	236	Y
F018429	Metagenome / Metatranscriptome	235	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070714_1005157141	F005638	GGAGG	MSVKAEMAFDICWEVYSTGRAVLESKRGMGAMDWKEATQYLWRPDFRPRLCEWVADFALAGQAALD
Ga0070714_1005157142	F018221	AGGAGG	MARNRGTSTARGIVPTQREILRDVMLAAGKYGAWMTLRELARLTRYGETSISAQLRHLRKAQCGGYVLEKRVRKAEVVGSEEHFVVWEYRLMPRLRRVRRGADAGGAELQRRRRP*
Ga0070714_1005157143	F018429	GGAGG	MNCKTQPPWDFLLSASRNSLQSYELSRLSHAANLRKEIAQLLDSWLEENTAAMLARWLMEQRERPASDDGNPAAAAGGE