Scaffold Ga0070714_100000071

Overview

Basic Information

• Taxon OID: 3300005435
• Scaffold ID: Ga0070714_100000071
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 90189
• Total Scaffold Genes: 102
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 70 (68.63%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.4774
  • Long. (^o): -85.451

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000260	Metagenome / Metatranscriptome	1431	Y
F000534	Metagenome / Metatranscriptome	1044	Y
F001318	Metagenome / Metatranscriptome	724	Y
F017683	Metagenome / Metatranscriptome	239	Y
F019104	Metagenome	231	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070714_10000007110	F017683	GGAG	MNFLQKLLGQGCKHRFSWPRIDDDGRYYQICLGCGTAYEYDWTLMRRTNHLLASGVHHA*
Ga0070714_10000007156	F001318	GGAGG	MTRWASIAAVWIAVVLVVMSVLAGAQTSETVSNQDPNTPQSSSRGKWHDPNAGDRMFFPRDTFWGWAQFDLAPPHNEIDPNLCAGNAGDYGGVNAPCSMFARYMLSGILEVRPFGRGPLRRFMVYGAPTFLFGKTIPKTLYTWSPDAIGIEHSWGVGIYIDKGFEFRVTQHFLFDRLGARDTNLGVADLGNNGPWGRFMSVGVRKTFGTRRW*
Ga0070714_10000007157	F000534	AGGA	MPQEISVSYQAIKSKVYRLIDSLVVGEKSEADIQESVRRWWALIHPADRPIAQKYLLMVLGRSATALDAMGDALLSSVGTAEPAHTSLAQAQIANKRMRLMERMVKETGSRPTV*
Ga0070714_10000007170	F019104	AGGA	LQRQQKALLTAVAVAALGLVSLAKTSKVAGKIVGYDLMRHVTKTTSGIQNQEIVVLEAGGPKQKYLKVVFSTFGTTQIEQQYFDGTLPLTVDVFRDHSCDEKEPRFVSHVSLNQIAGTYLLTDAFKTQPPAKIKNLECYAAIYKKKK*
Ga0070714_10000007185	F000260	GAG	MNWKSRLILGVLTALAMMLATFFLPRGGAMRDASLVQFPMTVGVWAIFVLLFVKLK*