Scaffold Ga0070709_10045459

Overview

Basic Information

• Taxon OID: 3300005434
• Scaffold ID: Ga0070709_10045459
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2725
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.4774
  • Long. (^o): -85.451

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005983	Metagenome / Metatranscriptome	384	Y
F006433	Metagenome / Metatranscriptome	373	Y
F007657	Metagenome / Metatranscriptome	347	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070709_100454591	F007657	N/A	HDRPRRSVNWVTFEVAGGGLVSVQLQHIVAIYDEQGTVKLATTASGVHVLKDITVQRAVMAVCAAADAEATRSG*
Ga0070709_100454592	F005983	GGA	MRTASDHDGQITYDLDEFCDDYGHPEGQLFTFEVTCNAVTYVYANVAGTVRARTVIFDLTGEDLVGTRKAH*
Ga0070709_100454594	F006433	GAG	MADTVYRVIHREDDSFAVEITRSGVLPQTAVGFATEAEATDWIAQDRRLMQAADPFRTPASRKWRGF*