Scaffold Ga0066830_10057453

Overview

Basic Information

• Taxon OID: 3300005433
• Scaffold ID: Ga0066830_10057453
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF45B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 801
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034211	Metagenome	175	N
F041168	Metagenome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066830_100574531	F041168	N/A	EVPFINLSMFETIADATGIPHYWRDADGNVSQFWHAGVIPKGTGVVCAHRERGMKHTFWTVTDPESELVGKMFIVGHTFKDRKEYEFEKFEYSNISPTLKYSILSEKP*
Ga0066830_100574532	F034211	AGGAGG	MAYLKKDDLVIIPSASGANIQARVVDMQFRRFRRSWKDKATGETKSRWKSVPYAVCECFLGAPIGTEFVIPGYKLKNETKDGEKLLVLRDQYAAEFGGPWIEKMIEDSRAKRESA*