Scaffold Ga0066830_10012913

Overview

Basic Information

• Taxon OID: 3300005433
• Scaffold ID: Ga0066830_10012913
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF45B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1605
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050758	Metagenome	145	Y
F097272	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066830_100129133	F097272	GGAGG	MDLTEFGLDNIEAAGSSGGGERVKPGRYNFEYAGSEEIQGANGWRALKIHFDVEGEIIKVSHAFTMAHNTSTKAVEIGRESLMKMLNAMGVSSIKNTDELLGKKVEGELVVGKKGYLEIADNFGNGWKPYGTTTAKENVDPKEVLPKEEIFPSDVDDEDDLPF*
Ga0066830_100129134	F050758	N/A	MTTQQEKLIFFMRKAKILVEDCMEKNGDDDLILPLGANRVFRDIVDALEEEISRADDYEEYDPG*