NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066830_10000001

Scaffold Ga0066830_10000001


Overview

Basic Information
Taxon OID3300005433 Open in IMG/M
Scaffold IDGa0066830_10000001 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF45B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)104048
Total Scaffold Genes117 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)83 (70.94%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006643Metagenome / Metatranscriptome368Y
F007391Metagenome / Metatranscriptome352N
F007946Metagenome / Metatranscriptome342Y
F008050Metagenome340Y
F008525Metagenome / Metatranscriptome332Y

Sequences

Protein IDFamilyRBSSequence
Ga0066830_10000001100F008050N/AMNRKTLELLLINYTNINKGLKPCSEKSKFEKLIKETEEKLKSTPLDVVYPNGMTALEYAHKLAAEANGRNNSTN*
Ga0066830_1000000157F007391N/AMIEKILAGTLALSISGCSMLGGFNALDPKNLIKTAATTGATYVVAGPIPAAVNAATSVAVDSVLPDDKPQISEIEAGNEEQLRAFMFANLTETVLYGVIGFLIFTNVVGPWAAQRRARRKAEQAAVDQRRKDKYDAMKAELAARRSKD*
Ga0066830_1000000172F006643GGAMDSDVKLLEIENKLERMHAALQRQEKELDSWRERSVRVPNWIRNAGFALFITLIGQTMTAVWWASEITNTQMNIVDDVKVNTEFRLSSTERYNEIMIKLTKMEVMMTNHFEQDTRN*
Ga0066830_1000000186F007946GAGMSTRDLIDNIKSGDAQASNNTFNSIMHDKLIDALDTHKQEVASKMYGASDDAPAVEEPAAETEVEVTGEVEADADV*
Ga0066830_1000000187F008525AGGAGMLTFKESFNEVLEAKLKLGGGEKVVKQFKKLGKKKNIEAVITQQKAGNKNFNLYIDGLKLDTYKDQIAAEAAIKEFIKLMGA*
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