Scaffold Ga0066845_10059709

Overview

Basic Information

• Taxon OID: 3300005432
• Scaffold ID: Ga0066845_10059709
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV78
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1414
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006662	Metagenome / Metatranscriptome	367	Y
F047121	Metagenome	150	N
F053344	Metagenome / Metatranscriptome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066845_100597092	F053344	AGGAGG	MNRKVFPLELYRRVLKRAKLDEDFYHAIISEYIEILDEHHGIDNLEESVTDWESENPSYFDSLLTTGD*
Ga0066845_100597095	F006662	GAGG	VRTLTTKEYKLISQIYNSTDEIEANVAFEFGIQNDLYYQLFHSYEETKK*
Ga0066845_100597096	F047121	N/A	EQFDQDVQKLRELIRACEELEVNNRNYTNSIHYENPINQSRFYK*