Scaffold Ga0066845_10038067

Overview

Basic Information

• Taxon OID: 3300005432
• Scaffold ID: Ga0066845_10038067
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV78
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1755
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008747	Metagenome / Metatranscriptome	328	Y
F032291	Metagenome / Metatranscriptome	180	Y
F103296	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066845_100380671	F103296	N/A	MMVTEAVVLPPVLPAVTVYDAEEVMADGVPLMAPVDESSERPAGRVGETDHEVTVPPLTVGVTVVMAVPLVRVNEFGL*
Ga0066845_100380672	F008747	GGAGG	MAPVEESSESPVGNDGETDHEVTVPPVVVGVTVVMAVPLVKVNVFGL*
Ga0066845_100380673	F032291	AGGAG	MVVGVPEIAPVEESSERPAGNVGETDQEVMAPPLTVGVTVVMAVPLVRVNEFGLYVRDEGAMSLTTMVTVAVSLPPVLEAVTV*
Ga0066845_100380674	F032291	GAG	MAEGVPLIAPVEESIERPVGSEGETDHEVMAPPLTVGVTVVMAVPLVRVNEFGLYASDEGAMSLTTMVTEAVSLPPVLLAVTV*
Ga0066845_100380675	F008747	N/A	VTAEGVPLIAPVVESIERPAGREGETDHEVTVPPLVVGVTVVMAVPLVNVNVFGL*