Scaffold Ga0066845_10036603

Overview

Basic Information

• Taxon OID: 3300005432
• Scaffold ID: Ga0066845_10036603
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV78
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1788
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007119	Metagenome / Metatranscriptome	357	Y
F026287	Metagenome	198	Y
F027814	Metagenome	193	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066845_100366031	F007119	GGA	MNKYQVIKDGKVLKEFDKPMAAAIFALNNEYGPGMSIVTNDKEATKSWTHFDYKEKL*
Ga0066845_100366032	F027814	GGAGG	MSKLKFNDLPKILDWIKEPSHAGHLFIVEQTLKSVKQEQYKVGTKVKFGRANGMKRMGVVVKLGPKKAVVDCSGAKWRVPYDLMDVVDE*
Ga0066845_100366036	F026287	AGAAG	MGKNQNNLVKKPLFYVIFSLILFLFCSGCVNSCNFGPDLEKISDSALENIENLAETNLKSGKMTCYF*