Scaffold Ga0066845

Basic Information
Taxon OID	3300005432 Open in IMG/M
Scaffold ID	Ga0066845_10000013 Open in IMG/M
Source Dataset Name	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV78
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005432 Open in IMG/M

Scaffold ID

Ga0066845_10000013 Open in IMG/M

Source Dataset Name

Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV78

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	50744
Total Scaffold Genes	44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	35 (79.55%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

50744

Total Scaffold Genes

44 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

35 (79.55%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location Name	Pacific Ocean: Eastern Tropical North Pacific
Coordinates	Lat. (^o)	Long. (^o)	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean: Eastern Tropical North Pacific

Coordinates

Lat. (^o)

Long. (^o)

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003872	Metagenome / Metatranscriptome	464	Y
F023961	Metagenome / Metatranscriptome	208	Y
F094092	Metagenome	106	N
F101484	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066845_1000001312	F023961	AGGAGG	MLNYIETNYPVNELLLKSYMNNQWEDSNDLYKEYMSWENNKFFVQEIKSFDRPLLREIKKIWNYLGIRPQEWRCNFFRVLPGGELPLHTDVLSKCSVVIPMTEMTGELYFADGTEVLYNNMTVINTKVAHGVKAPTKERIVFHMGIHDVPFGDIKCIAMN*
Ga0066845_1000001314	F094092	AGGAG	MLKPLDSHKPAQSTTFLPHERTDVLRKLKEYKFNESDRLADNYKDIDWLNLEAISIYERKDEIVGFSSIIHREEYFDKGEVRILNRYYESADMRRTSKVIGDDHVCEMVRQQLEMAKELGYKKAFISRCRSPRHLKKLIENIGEKTGTKWQMLEDKVAVCDPKFDECWQYKACTELC*
Ga0066845_1000001321	F101484	AGGA	MTELKKLMKFRENIHHFKADDPGREKIDKILEDAHHLVPHKNNMWAYNIDVYGPEHKDEKETVALQTVTGYQKREFVNYPLEKQKDIYNKWKSQRETMREDPSYENRQRSAKQQGFAFNEQVTAPYLLVYYQVPGFPTKKQMEKNYKRLLIDYKDNDDWIIAASMHGHGTTLLAAEQGLHASFCKCYYYSETQFTNILAPLRKGWKNVAFLLGIGYKDGEMPYYKNPLKPDIEEIVTWK*
Ga0066845_1000001337	F003872	N/A	MSRISKKKLIKVLKGDLEQPVTKQSLLDQLAKPVTQEEWLRGYNEWKKKQLAND*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0066845_10000013

Overview

Ecosystem & Geography

Associated Families

Sequences