Scaffold Ga0066854_10193281

Overview

Basic Information

• Taxon OID: 3300005431
• Scaffold ID: Ga0066854_10193281
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV75
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 686
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000319	Metagenome / Metatranscriptome	1307	Y
F020789	Metagenome	222	N
F092211	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066854_101932811	F020789	AGGAG	MANNTNKYFTWYVKSRNKVCTFLGADEFDGFISKQWTDRNGNDCYNFWDIEAKHPRTAVNCKWRNA*
Ga0066854_101932812	F092211	GGAGG	MQINKKPSELSTQLFDMTKSFSNISTSAQLHGKYMLLKEMQIFLAEKEKEINEQIKKAESNV*
Ga0066854_101932813	F000319	N/A	MFKDLLLIILGAGISSAYFFWQDYKNKKEIKKQERLNQIK*