Scaffold Ga0066854_10026823

Overview

Basic Information

• Taxon OID: 3300005431
• Scaffold ID: Ga0066854_10026823
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV75
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1902
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F059063	Metagenome	134	N
F062152	Metagenome / Metatranscriptome	131	Y
F099435	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066854_100268232	F062152	GAGG	MGPHYMNELIKHINKLNEETRKSGAVGFLTNDPDHWASYGVYTIGDFQLYLEREHEHNMYKNNF*
Ga0066854_100268234	F099435	AGGAG	MLMIKTETLKEIEKCEPKRQTALMYVVKNCSSYKVSHTTENEHWLCGSVIVTHWNHDTGYTTKYKGVRYPDNFESWSFHNDELASEAFKSQHEMENI*
Ga0066854_100268237	F059063	AGGAGG	MNLKNLYGSFLQKPNSPEAFIANVIYERYGAKRKKMLQGLYNIVNGGPTHYWGKCQVQFASFSITEIFVSPLEKNVSNKNNNFLLTKQVNIHNLEFYA*