Scaffold Ga0066854_10012764

Overview

Basic Information

• Taxon OID: 3300005431
• Scaffold ID: Ga0066854_10012764
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV75
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2782
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013700	Metagenome	269	Y
F040683	Metagenome	161	Y
F058216	Metagenome	135	Y
F096041	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066854_100127643	F040683	GGAG	MKKYRVWGYETQGYYIDLEANNKQDAHDKAMDVDRDDWIEGNDGESTCFDINKKDMEVIK
Ga0066854_100127646	F013700	AGG	MNIDYKNLTYPFEDVGDAPFNVVRILNECYNDYSNGNLGDGERMASGDMVRGEFLRRIAQIGYDELKFNDIADTLENDVDENNSHLVSKYYEPPETNEEDDEV*
Ga0066854_100127647	F096041	AGGAGG	MNKNKEYIYITRTMKINVPALLCQDAIDKVLTMKKNDLIPKEKGFLYTRCRVRKGRDEYRL*
Ga0066854_100127649	F058216	AGGAG	MNKTIAQLVKDKHWSVQGLAKSINITKEDIQTWEKSNKPYKKSKKKSYLW*