Scaffold Ga0066854_10003240

Overview

Basic Information

• Taxon OID: 3300005431
• Scaffold ID: Ga0066854_10003240
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV75
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5602
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007121	Metagenome / Metatranscriptome	357	Y
F009987	Metagenome / Metatranscriptome	310	Y
F010942	Metagenome / Metatranscriptome	297	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066854_1000324010	F007121	N/A	LFGVTPPATGNCQTVLQDKLQEPTLDKLIDWVPEEVPRTVSFYFDTDGDGKFDLKIAYSLIEAYPCNAYNCVNTITDNGDHWVLPAPGMNYFVIKKWTLYRYADDEDWRGVYRTQQWIFKHPYYDDWLREKFYLLWPDQMQ*
Ga0066854_100032403	F010942	AGGA	MESNKVKFCDEHQSRASETQILGIRKDIEHLKYVINELEKECEFVKDHFTTKNGDRLDDVKVLHGRIEQRQQADLEFHENVRKKVSDRFDTLDERIRQLDKWKWATWGALMMIGALVGYFFPISLK*
Ga0066854_100032406	F009987	AGGAG	MLGSIIGNALGLGLKIMDKIEKNSDKHSFEEFKARKKEMDKSLGDADVEGIDSMFEYLAERARGGNTGRKG*