Scaffold Ga0066849_10286526

Overview

Basic Information

• Taxon OID: 3300005430
• Scaffold ID: Ga0066849_10286526
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV69
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 631
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001039	Metagenome / Metatranscriptome	795	Y
F008339	Metagenome / Metatranscriptome	335	Y
F093698	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066849_102865262	F001039	AGGTGG	MIDYNLVLYIGIGLIVFGFVLFLVSIHFERQAEIKLFKLEQLDKAFRKAKENEQL*
Ga0066849_102865263	F008339	GAG	MIYLIVRKYQYKDSEPNYRIEKWSTTIKEANQFLSALSLLDDDQWTMFFIVPAQENPALILTDEVA*
Ga0066849_102865264	F093698	N/A	TIGKVQISKNGVLMFYYWDIDAEPDEKGNQWRCAKNPMTIKATQTIEG*