Scaffold Ga0066849_10121560

Overview

Basic Information

• Taxon OID: 3300005430
• Scaffold ID: Ga0066849_10121560
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV69
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1034
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F015346	Metagenome / Metatranscriptome	255	Y
F021674	Metagenome	218	Y
F059941	Metagenome	133	Y
F063682	Metagenome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066849_101215601	F059941	N/A	QFAAYGAVMDTGYVSSHDKEDPELMWVECVKMGPQRVRKDHTLLEVLSEAG*
Ga0066849_101215602	F063682	GGAGG	VKPGDLVRIRKTSIDHMSANWFIWHAEKMTPLVLIEELNKSYWNVLKPDGDTVFIHKSHLTKRMY*
Ga0066849_101215603	F015346	GAG	MDHKLYKVGDLVAVASNRVLGIITKSNYWALDEYLGGEIEMVDVMFGSSVSKQYPVQYLVDM*
Ga0066849_101215604	F021674	GGTGG	MERETYNTRLKTNPEDIPVGSLLRVKKHCRNNITIRNNGEYGILALSDKGKYITHDVLFPNGTRCIYMPLNWEVVSYA*
Ga0066849_101215605	F006383	GGAGG	MRDKMWEVQQPGTLLRARHSAKYGQLALVLEEAYDGPMPTNGYPPRRYVKMQWVATGERFEEMLTNAHNCFDIVSSCDTLGAEEN*