Scaffold Ga0066849_10104930

Overview

Basic Information

• Taxon OID: 3300005430
• Scaffold ID: Ga0066849_10104930
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV69
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1122
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002078	Metagenome / Metatranscriptome	596	Y
F013820	Metagenome / Metatranscriptome	268	Y
F036736	Metagenome / Metatranscriptome	169	Y
F048916	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066849_101049302	F036736	GGAG	VDKLNEMLIGALAVVGGFITKRVFNNHDSLSSRVADIEKNLLTKEDISHLERNMEMIVSHLIKKGDTP*
Ga0066849_101049303	F013820	AGGAG	MIEAIIGFIDKAMPGQKTYVLMIVGIGMLVAQMLGYHQFPTEAWGLVGVGGAATWKMGQDRKKK*
Ga0066849_101049304	F002078	GGA	MFAGQGWFEIAGQVVLVFTAITGALPDKFVQKIPVLSTIWPIFNWLAGNVFNNINHPKGMAAAKDVEKEIDEAKAKVRERSGMPDVLDGM*
Ga0066849_101049305	F048916	GGAG	MKLKLKLGSVVVCLTFLTGCSVGLLTELVAPVTNFGLGLYNADTYYSKECAWYEEIKLTQSTKQWLSDSKPPEGVVKDLAKVARNNDIYREVC