Scaffold Ga0066849_10017896

Overview

Basic Information

• Taxon OID: 3300005430
• Scaffold ID: Ga0066849_10017896
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV69
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2877
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010950	Metagenome	297	Y
F057352	Metagenome	136	Y
F067640	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066849_100178962	F067640	AGGAG	MIEVGSLLRMWGNHSKWIALDVIADQVLVVSQKHNHKMWQTKAAFEVIG*
Ga0066849_100178963	F057352	GAGG	MKLWVLHGTYENELFSSIHLTEKGCALAAIADILDFLSVSDEDSALQVINDCYAYTETDGEQTEAFEWDHDKLKEMSSKDLWKIFGDWTETCWERMSDRSYYIDATPQMVQA*
Ga0066849_100178964	F010950	N/A	MKIWVVRQTCTYDNETYVTSHLTEKGALITAIKTVREDLCDGYDEDELEDMRPGMPHNYQEDLTQYSSEQLNGIIEDWWEYAWQINEAASYQIHETRVLV*