Scaffold Ga0066849_10008139

Overview

Basic Information

• Taxon OID: 3300005430
• Scaffold ID: Ga0066849_10008139
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV69
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4265
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018267	Metagenome	236	Y
F025414	Metagenome	202	Y
F037480	Metagenome	168	Y
F099989	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066849_1000813910	F037480	GGAG	MKVGDLVIMPGSCYRDKSDNPATGIILKTKRDGINRDTSRFARVEVYWIADAEASWEPLKWLEVVSEK*
Ga0066849_1000813913	F018267	AGGTGG	VKVGDLISFKPKTFSDDDWSNPGLVIDSYVSDDRQTGGWLDEIWIVWIDGHRYMVNERNDDVVYLTSSLQKDA*
Ga0066849_100081394	F025414	GGAG	MQVGDLVRETMDGNIGVILAWENDGWLVNFPKHGMVFHMLPRLLEVVDASR*
Ga0066849_100081395	F099989	GGAGG	MQVGDLVKVIYDGTMGLVVRVIDGDHPWIYLHTGESFRIEKLELVNAGR*
Ga0066849_100081398	F025414	AGGAG	MKVGSLVRETMDGNVGVILAWENDGWLVNFPKHGMVFHMLPRLLEVINASR*