Scaffold Ga0066849_10006084

Overview

Basic Information

• Taxon OID: 3300005430
• Scaffold ID: Ga0066849_10006084
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV69
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4925
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F060350	Metagenome	133	Y
F068730	Metagenome / Metatranscriptome	124	Y
F076504	Metagenome	118	Y
F086179	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066849_1000608410	F068730	AGGAG	MGQKSWPEERAEIAIWLSGFLGIYKKWVDKILDNDDHDVTKNKIIDLLTEWIAKLEETKIKIMRMSDTPKQEDEDDTN*
Ga0066849_100060843	F086179	GGTGG	LIERKLLLENLLRLRSRIEDWTQVHGWESMDYYREKKDGKGRIVWKLSDWEFVDNMYKAVYNGPNGFGNDYSFDKETVRTWNKMWKRYKNDYGLIMGDNPNLKPDWDQIQQMEWDEVELAK*
Ga0066849_100060846	F060350	AGGAG	MEKLIKDVLDKYNSKRKPISNGELANLIVAHMKVGINGKKGWYLNMNSYDGQYDRAQEMIDEYK*
Ga0066849_100060848	F076504	GGAG	MARDIFGNRRVTKQDLYTKKRATYADVRSEYVKMVIWVLAGYLFFHFIVMGWGI*