Scaffold Ga0066849_10003508

Overview

Basic Information

• Taxon OID: 3300005430
• Scaffold ID: Ga0066849_10003508
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV69
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6460
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012123	Metagenome	283	Y
F027561	Metagenome	194	Y
F081207	Metagenome	114	Y
F105147	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066849_1000350811	F012123	AGGAG	LIKRNPCRVKKVEYKADGVHIVERRGYAQERKKIDGEDMVFVMEGGDTGIGYWYSKDEVRLTKGKWTNNTGVVVSKKSFWKRAK*
Ga0066849_1000350813	F027561	N/A	MAKKEITRKYYESLINDYVDGKAKIRGDHPDDVQKAIDSFFHAGKMLVDHPEIGHIPTEYIEKLISTLAQHPEYHPLVAELIGIINDKV*
Ga0066849_100035086	F081207	GAG	MSNKEKYKKEIKSLRKLLDDNEYTRTLPTGYHHFLSDMHRKLIGNSNITLKMLSSIQNAAATYECYGSPQTRMKRDAMLSKITKLKYMLSKCGYTRQYESEKMEFLDSITNRVHSRGTLTPKQAKYANQLHKQFNKRILP*
Ga0066849_100035088	F105147	AGG	MSNKKQWMYEKLNRLVKLCKATEPDKPDDEHLFQPSNIEAFDLLMEVDERYDRMTPREIRDIMVEANEIWKFRRKIYNGDTDWNWMSKLDDELEVFINKDQAINAIKHYRNEFKKQMGTAPSLKDSKDYVDKMRVRMGKMPK*