Scaffold Ga0066849_10003298

Overview

Basic Information

• Taxon OID: 3300005430
• Scaffold ID: Ga0066849_10003298
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV69
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6669
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001721	Metagenome / Metatranscriptome	647	Y
F009104	Metagenome	323	Y
F033252	Metagenome	178	Y
F065110	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066849_1000329816	F001721	AGGAG	MRNVWSTERKEIATWLSGYLAMIKKWVDKILDNEDHDVDKNKIINQIDEWIKWLEETKIKIIKMKDTVIEEE*
Ga0066849_100032983	F065110	N/A	MKISSEVSIELRKIKAALGDMYNKLNATLYKKNLGAKVSYSEVKPYDVVSDNFEYISKIVRDLQDSEIVED*
Ga0066849_100032984	F009104	GGAGG	MANDHARDRYDPPKIGSDFDKEYFGDVNIGEVFRLRPDSRAKTFRKVKDGVAFDVKELKEVNLGDRDEIYVKS*
Ga0066849_100032986	F033252	AGG	MKEKAILIKDFYNDKGALHRGEKVVIEGKAAEGFIRVVTGTGAVYVIPSHIVKKTS*