Scaffold Ga0066849_10002601

Overview

Basic Information

• Taxon OID: 3300005430
• Scaffold ID: Ga0066849_10002601
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV69
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7445
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (46.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013236	Metagenome / Metatranscriptome	273	Y
F016598	Metagenome	246	Y
F101842	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066849_1000260110	F013236	GAGG	MIDWIQSNWMSVVGTVAVIGGGMYIPFVRGLVLTGFKTMISEKVVKKIAIQIVEKLVKSSKNKLDDVWFAEFKKKVDNA*
Ga0066849_1000260113	F016598	GAGG	MDREKRFLYNSKGVKTKLQIGFPAKNSGNDGEERVVKTPDGKLRLYRKELGAWHYLEFTRS*
Ga0066849_100026017	F101842	N/A	MDKVIVSAMFILSVVIAFSIREDMHLQVSLVALVVIGLKATKKVLDD*